Skip to another splice site:
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 5'  3'   		2  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

taattagttttcattattcgtttaacctaattaattaattactttatcattatttcggtctcattgaatgagttggatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG

Basic information

species Glycine max
transcript GLYMA17G36080.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7589387|gb|AW705162.1|AW705162
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|163922977|gb|EH040184.1|EH040184
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298185911|gb|HO031072.1|HO031072
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|31466571|gb|CD408599.1|CD408599
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTTGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|151410321|gb|EV280136.1|EV280136
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACAAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|6482924|gb|AW202192.1|AW202192
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|31476255|gb|CD418283.1|CD418283
EST:     GTCACCAATAAAAGTGGACTCGGTGGATGAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: GTCACCAATAAAATTGGACTC-GTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|192312105|gb|FK003868.1|FK003868
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|192298352|gb|FG991772.1|FG991772
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|17400543|gb|BM177325.1|BM177325
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298182530|gb|HO031265.1|HO031265
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|7925588|gb|AW831614.1|AW831614
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298191660|gb|HO039139.1|HO039139
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGGCGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|213600426|gb|DB966177.1|DB966177
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|9898894|gb|BE607862.1|BE607862
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAA
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAA
EST: gi|209701152|gb|BW652654.1|BW652654
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|58019938|gb|CX706680.1|CX706680
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|6482685|gb|AW201924.1|AW201924
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|7692378|gb|AW760486.1|AW760486
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|9258893|gb|BE347040.1|BE347040
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298171229|gb|HO016261.1|HO016261
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGTGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|15813697|gb|BI785972.1|BI785972
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|9898567|gb|BE607535.1|BE607535
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298199105|gb|HO042468.1|HO042468
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|151407631|gb|EV277446.1|EV277446
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCGCATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|16347221|gb|BI972816.1|BI972816
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|7692459|gb|AW760565.1|AW760565
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|192312106|gb|FK003869.1|FK003869
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|9899163|gb|BE608190.1|BE608190
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|8826960|gb|BE210690.1|BE210690
EST:     AGTCACCAGTAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298170873|gb|HO015849.1|HO015849
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298199488|gb|HO042851.1|HO042851
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|26046013|gb|CA783381.1|CA783381
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298191833|gb|HO035915.1|HO035915
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298193616|gb|HO040264.1|HO040264
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|58022941|gb|CX709682.1|CX709682
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|7284134|gb|AW596732.1|AW596732
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|19053456|gb|BM732123.1|BM732123
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298170473|gb|HO019097.1|HO019097
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298192416|gb|HO036498.1|HO036498
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|19269387|gb|BM885643.1|BM885643
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298179269|gb|HO027740.1|HO027740
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298185484|gb|HO030697.1|HO030697
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298190112|gb|HO032233.1|HO032233
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298166716|gb|HO010155.1|HO010155
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|15813880|gb|BI786155.1|BI786155
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|17022614|gb|BM093648.1|BM093648
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|151410541|gb|EV280356.1|EV280356
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGACTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|58022726|gb|CX709467.1|CX709467
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298172992|gb|HO019991.1|HO019991
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298166080|gb|HO009051.1|HO009051
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298181796|gb|HO025971.1|HO025971
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
EST: gi|298174486|gb|HO014631.1|HO014631
EST:     AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGA                         AACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG
genomic: AGTCACCAATAAAATTGGACTCGTTTATCAGTTTCACATTGCTCCTAAGGtaattagttt ... gatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttaattaattactttatcattatttcggtctcattgaatgagttggatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG
  aattaat  putative branch site (score: 3)
                                               tttct  putative PPT
     taattactttatcatt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
taattagttttcattattcgtttaacctaattaattaattactttatcattatttcggtctcattgaatgagttggatttctagaAACTTGGATTCGACGAGGTCGTCTACACCGTTGATCTCAAGAAAGGAGAGGTCACCAAAGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG