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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttactgtgtccttggacattgtatataggcttcttcactttttcctagtcaatgaaaaacaaatcagttttgcattttctcttacccttgtttattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAAT

Basic information

species Glycine max
transcript GLYMA17G34380.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G34380.1 (Glycine max), 3'ss of exon 3
lower sequence: Vv04s0008g01970.t01 (Vitis vinifera), 3'ss of exon 2
----------------------------------------------------------gtgagttactgtgtccttggacattgtatataggcttcttcactttt---------tcctagtcaatgaaaaacaaatcagttttgcattttctcttaccc--ttgtttattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAAT
                                                          ||   |||   || | ||  |  |||||  |    |  | ||  | |         | || || | |  |     | |||| |||  ||||| | ||      |||   |  ||  || ||||| |||||||||||||||||||| ||||| ||||||||||| ||  | ||  || |  |  ||||  |
gtaagccatgtcctcctgctctcttttcttttcttttctttttttgtctttcttgtttgtattttaaaatgccatttaattttgtaagttttgtaatccatgtatgtgattaaattcttgtaagtttattgatattcaggttttgattttttattttttatttgcaaacattttagTAATCTCTCAGGGTTGAATCTTGATGGGGAAATCTCACCTGCAATAGGAGATCTCAAGGGGCTACTCTCTGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|207691301|gb|GD673099.1|GD673099
EST:     GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACT                         CAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA
genomic: GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttact ... tattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA
EST: gi|207810552|gb|GD781661.1|GD781661
EST:     GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACT                         CAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA
genomic: GCCTGGAGAGGGATATCATGTGATAATGTTACCTTTAATGTTGTTGCACTgtgagttact ... tattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcaatgaaaaacaaatcagttttgcattttctcttacccttgtttattttgcagCAATCTTTCAGGGTTGAATCTTGATGGTGAAATTTCACCTGCAATTGGGAAACTTCAGAGTTTGGTCTCAAT
                               ctcttac  putative branch site (score: 3)
                           ttttctcttacccttg  CT-rich tract
                                        ttgtttatttt  TA-rich tract