1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tactttgcatgtcttttgatgccccatttaataataatgaatatccagaatacttgcatagatctatttctttactgactattctatttatatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGCTTCCTTATACATATTATTCTCTTCCTTATTGTCCACCAAATAAAATAG
species | Glycine max |
transcript | GLYMA17G34020.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGEST: gi|213598705|gb|DB964271.1|DB964271
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGEST: gi|12773257|gb|BG238184.1|BG238184
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGEST: gi|213599111|gb|DB962218.1|DB962218
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGEST: gi|209718610|gb|BW674736.1|BW674736
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
EST: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAG GGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
genomic: GCGCTCTCTGCTTCTACCTCCCCGGCGTCGCTCCACAGGACTTCCAGAAGgttcgctcca ... tatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAG
cagaatacttgcatagatctatttctttactgactattctatttatatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGCTTCCTTATACATATTATTCTCTTCCTTATTGTCCACCAAATAAAATAG
tactgac putative branch site (score: 1)
actattctatttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactttgcatgtcttttgatgccccatttaataataatgaatatccagaatacttgcatagatctatttctttactgactattctatttatatggtgtagGGAGATCCACTGCAAGTAAAAGTAAACAAATTGACTTCAACGAAGACCCAGCTTCCTTATACATATTATTCTCTTCCTTATTGTCCACCAAATAAAATAG
- - - gcatgtc
- - - - - - - - - - -ccccatt
- - - - - - - - - - - - - - - - - - - - - - - - - - cttgcat