1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttcctttttctcaactttgatgtaaaagaaaatgttagttattgtttgctgaaaagctaaaagctaggaaattgactgtgttgttgctggtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCACCAGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCATT
species | Glycine max |
transcript | GLYMA17G33630.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCTTCTCCAACGCACTTACCCATCAGCTCCCCCAGCGCTTCGCAAATCC TTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAEST: gi|10847800|gb|BF070423.1|BF070423
genomic: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCgtatgctatt ... gtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
EST: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCC TTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAEST: gi|192301685|gb|FG994393.1|FG994393
genomic: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCgtatgctatt ... gtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
EST: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCC TTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAEST: gi|298180682|gb|HO022121.1|HO022121
genomic: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCgtatgctatt ... gtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
EST: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCC TTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAEST: gi|207824718|gb|GD794610.1|GD794610
genomic: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCgtatgctatt ... gtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
EST: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCC TTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
genomic: CTCTTCTCCAACGCACTTACCCATCAGCTTCCCCAGCGCTTCGCAAATCCgtatgctatt ... gtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACA
tttgctgaaaagctaaaagctaggaaattgactgtgttgttgctggtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCACCAGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCATT
aattgac putative branch site (score: 3)
aaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttcctttttctcaactttgatgtaaaagaaaatgttagttattgtttgctgaaaagctaaaagctaggaaattgactgtgttgttgctggtggtggcagTTTTATTTGGTTATATGCCGAGTTGCTACTGTGTTGAAGACCAGGTATACAGCACCAGGTTTCTGGAATGCTGGACTGGGCCTTTTTGAGCAGGCTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - tgatgta
- - - - - - - - - - - - - aagaaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gactgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgct