1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tttctacggttaaaatactactacacttatcttagaagaattagttgaactccggcatctcatgaaaaactgttatattgaacatgttttctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACATAGGCTTTTGATGTATGAATACA
species | Glycine max |
transcript | GLYMA17G33470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTG GCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAEST: gi|58021251|gb|CX707993.1|CX707993
genomic: TTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagttagc ... ctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTA
EST: CTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCT- ---GAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAEST: gi|38192793|gb|CF921999.1|CF921999
genomic: CTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagttagc ... ctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTA
EST: CTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTG GCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTA
genomic: CTGTGAAAAGGTTGGACTTGGATGGCTTGCAAGGTCACAGGGAGTGGCTGgttagttagc ... ctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTA
tgaactccggcatctcatgaaaaactgttatattgaacatgttttctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACATAGGCTTTTGATGTATGAATACA
catgttttctttttct CT-rich tract
aaaaactgttatatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttctacggttaaaatactactacacttatcttagaagaattagttgaactccggcatctcatgaaaaactgttatattgaacatgttttctttttctagGCAGAGATTATATTTCTTGGACAACTAAGGCATCCACATCTTGTCAAGTTAATTGGGTACTGTTATGAGGATGAACATAGGCTTTTGATGTATGAATACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - ctacact
- - - - - - - - - - - - - - - - - - - - - - - - -ctccggc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgttt