1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtagctagctaatgtgatttatggatgccatgtggtttgtgacttcttctgattgtttagtggtttttataaactaattgttgttgtgttgttgttgtagGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGAACTCT
species | Glycine max |
transcript | GLYMA17G33430.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCGEST: gi|213608282|gb|DB970837.1|DB970837
genomic: CCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCGgtgcttccca ... gttgt
EST: CCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCG
genomic: CCGCATCATCAAGGACTTCCTCGTCCAAAGCGGCGACCCCACCGGCACCGGCACCGgtgcttccca ... gttgt
cttctgattgtttagtggtttttataaactaattgttgttgtgttgttgttgtagGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGAACTCT
aactaat putative branch site (score: 2)
tttttataaactaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctagctaatgtgatttatggatgccatgtggtttgtgacttcttctgattgtttagtggtttttataaactaattgttgttgtgttgttgttgtagGTGGTGAAAGCATTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCACGTCTGAAATTCAAGCACAGAGGAATAGTTGCAATGGCCAATGCCGGAACTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - -gctaatg
- - - - - - - - - - - ggatgcc
- - - - - - - - - - - - - - - - - gtttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - agtggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttg