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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacctctcctctcttctctcaattccgccacgttctttcgtcgtcaatttttttcaattttcagttactttataaattaatagtatcttcctttttctgtgttatatgcagTTTTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGTCCGCTAACGTCATCACACTTCTTCAG

Basic information

species Glycine max
transcript GLYMA17G32030.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151409838|gb|EV279646.1|EV279646
EST:     CATGACCAAACGCGGAGCCTTCGCCGCCGTCTCCTACATGTCCTGCGCCG                         TTTTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGT
genomic: CATGACCAAACGCGGAGCCTTCGCCGCCGTCTCCTACATGTCCTGCGCCGgtaacctctc ... ttatatgcagTTTTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attttcagttactttataaattaatagtatcttcctttttctgtgttatatgcagTTTTGTTGGTGATGTTCAATAAAGCAGCGCTTTCGTCTTATAACTTTCCGTCCGCTAACGTCATCACACTTCTTCAG
                  aattaat  putative branch site (score: 3)
 tcttcctttttctgtg  putative PPT
 tttataaattaatagt  TA-rich tract