Sequence
atgc intronic sequence ATGC exonic sequencegtataagattcctgtatcttatttttgttcattttttcagtttcagaaatgaattgatagttttatgttccttttgcagGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG
Basic information
| species | Glycine max |
| transcript | GLYMA17G31400.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G31400.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv04s0008g05130.t01 (Vitis vinifera), 3'ss of exon 1
gtataagattcctgtatcttatttttgttcat---tttttcagtttcagaaatgaattgatagtt--ttatgttccttttgcagGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG
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gtattgaacctctcaactttgattctattcaaggatttatgtatatatgacatagactcttcacaagctggattcactgtacagGAAGATGGAAG---GTCAACACCATCATCAGCGAGGCACAAGAGAGGTTGCAATTGCAAGAAGTCAATGTGTTTGAAAAAATACTGCGAGTGCTATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|21995121|gb|BQ786649.1|BQ786649EST: CATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATG GATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGC
genomic: CATTTGCTCCCAAGATTGTTCAGCCTACCACTGATATTTCTTCACATATGgtataagatt ... ccttttgcagGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgttcattttttcagtttcagaaatgaattgatagttttatgttccttttgcagGATGATGAAAATCTGACAACACCGTCATCGGCAAGGCACAAAAGAGGTTGCAATTGCAAAAGGTCAATGTGTCTGAAAAAATATTGTGAATGTTATCAG
aattgat putative branch site (score: 4)
ttttatgttcctttt putative PPT
aattgatagttttat TA-rich tract
