1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaacatttaattttaactcttcaaaaatggtatcatctatctatatgagtgtgtgagtgtaaattgccatgatgttgctgaatgagaaatttggtttctttaatttagGACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAG
species | Glycine max |
transcript | GLYMA17G28970.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAGGTCAGACCATTCAGAACCACGTGGGCCTCTGGTTAATGGTGCCAAAG GACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCACEST: gi|19348647|gb|BM893179.1|BM893179
genomic: TAGGTCAGACCATTCAGAACCACGTGGGCCTCTGGTTAATGGTGCCAAAGgtaacattta ... tttaatttagGACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCAC
EST: TAGGTCAGACCATTCAGAACCACGTGGGCCTCTGGTTAATGGTGCCAAAG GACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCAC
genomic: TAGGTCAGACCATTCAGAACCACGTGGGCCTCTGGTTAATGGTGCCAAAGgtaacattta ... tttaatttagGACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCAC
tgagtgtaaattgccatgatgttgctgaatgagaaatttggtttctttaatttagGACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAG
ctttaat putative branch site (score: 4)
tttcttt CT-rich tract
aaatttggtttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacatttaattttaactcttcaaaaatggtatcatctatctatatgagtgtgtgagtgtaaattgccatgatgttgctgaatgagaaatttggtttctttaatttagGACCTGAAAGGAGGTCCTTTGAGGCACCACCCCGTAGATCACAGGATGCACCCCGTAAATCAAATGATGGAACAACAGATTCCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA