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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactctctctctctctctctctctctctctctctctctatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcttttgcagattgcttactttacttacttgttccctctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG

Basic information

species Glycine max
transcript GLYMA17G26900.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|151401073|gb|EV270887.1|EV270887
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|14259240|gb|BG882148.1|BG882148
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|151412705|gb|EV282517.1|EV282517
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|16105581|gb|BI893321.1|BI893321
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GATTTATTAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298190184|gb|HO032305.1|HO032305
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|254342909|gb|GR859071.1|GR859071
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|23064041|gb|BU578814.1|BU578814
EST:     CCTCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|5753671|gb|AI960958.1|AI960958
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAA
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|26057377|gb|CA800291.1|CA800291
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCAT
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCAT
EST: gi|11687742|gb|BF595418.1|BF595418
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298179735|gb|HO024950.1|HO024950
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|298197455|gb|HO044934.1|HO044934
EST:     CCGCAACCCAAAACTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|151402880|gb|EV272693.1|EV272693
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|27424702|gb|CA936222.1|CA936222
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|6482381|gb|AW201644.1|AW201644
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|11412862|gb|BF424873.1|BF424873
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
EST: gi|33390191|gb|CA853398.1|CA853398
EST:     CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGC                         GAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
genomic: CCGCAACCCAAATCTTAGCGCCTCATCTCACTCACCATCTCCTTCGTCGCgtaactctct ... tctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atatatatatcttttgcagattgcttactttacttacttgttccctctttcgtagGAAATACAAACACTGCTAGTGTTCGCGATATTGGCTTTCATCAAG
                              tacttac  putative branch site (score: 1)
                       cttactttacttactt  CT-rich tract
     tatatctttt  TA-rich tract