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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatttggttagtcagttgatatctttttactgggcttatagttctttttttgattattcactttgatctgctaatttttggcttatgcttattggagcagGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACG

Basic information

species Glycine max
transcript GLYMA17G23500.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G23500.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G388892_T02 (Zea mays), 3'ss of exon 23
gatttggttagtc--agttgatatctttttactgg-gcttatagttctttttttgattattcactttgatctgctaatttttggcttatgcttattggagcagGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACG
  |   || |||   |   |   |  | || |||  ||  | |||| |   |||| |  |    | |  ||   |  ||     |||   ||| |||   ||||  ||||| ||  | || | |    | |||||| | || ||||| || || |||||| ||||||||||||| || |||||||||||||||||||| ||| 
cgtgcagtgagttttaaaagtactagtatttctgatgccaacagttatgaatttgttattgtgatctcgtcatgtgtttcactacttgatctttttg---cagGCGAACATTCGTCTGCGTCGTGTAAGAAACCCTATAATCGGTGACAAGTTCAGCAGTCGACATGGGCAGAAGGGTGTTTGCTCTCAGTTGTGGCCTGACA

upper sequence: GLYMA17G23500.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 23
--gatttggttagtcagttgatatctttttactgggcttatagttctttttttgattattcactttgatctgctaatttttggcttatgctta-ttggagcagGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACG
   ||     || ||||  |    |     | | |  ||| |  | |||| ||   ||| |  |||        |     |   || | |||| || | |||||| || || || ||||| | |||| | || ||| ||||||||||||||||||| || ||||||||||| ||||| |||||||| ||||||||||||||  
cctatgaaaatattcagcagggcacaa---atttgtattacatgtattttgtttcatatgctttttacataaacatcccctatattttccttacttcgggcagGTGAATATTCGTTTTCGGCGTCCTAGAAATCCTATTATTGGTGATAAATTTAGTAGCAGACATGGGCAAAAAGGTGTTTGCTCGCAGTTGTGGCCAGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6482290|gb|AW201561.1|AW201561
EST:     AAAACAAGAAGCACCTTCAAAAG                         GTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTT
genomic: AAAACAAGAAGCACCTTCAAAAGgtgagtcaag ... attggagcagGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttgattattcactttgatctgctaatttttggcttatgcttattggagcagGTTAACATACGCTTTCGACATCCTCGGAACCCTGTTATTGGTGATAAATTTAGCAGTAGACATGGGCAGAAAGGCGTTTGCTCTCAGTTGTGGCCAGACG
                       tgctaat  putative branch site (score: 2)
                          taattttt  TA-rich tract