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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaattttttacggcattggtttgctgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG

Basic information

species Glycine max
transcript GLYMA17G20610.4
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaattttttacggcattggtttgctgttagtttctt---actctgatgaagttgcttactgttttttttttttt--ttgtgtatggtgttgttgt-gtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
      ||| | ||   |   || |||||| | |  |   |  ||  ||||     ||  | ||| |   |   |  |  |   |  | || | || || | ||||||||||||||||||  ||||||| || || ||||| || ||  |||| |||||||| |||||||| |||||||||
------tttaatggtggttacttactgttactatgattaaatgcttttgaaaagttttgatatttctcaataaatgatgatacttttttttatggttgttttgcagATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAG

upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: AT5G66880.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaattttttacggcattggtttgctgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatgg--tgttgttgtgtg--tcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
| ||||||    |  ||||   || | ||  |   |   | |||      |||||  |||   ||       ||||| |||   |||   | || |  | ||||||||||||||||||  | ||||| |||||||| |||||||| || ||||||||||| ||||| ||||||||||||
gaaattttg---gatattgaaatgatttttttagttggttttgagtgttctgctt-ttgtagattaggacagttgtgaatgacttgtaactatgggagttgcagATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAG

upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
-----gcaattttttacggcattggtttgc-tgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
      ||||||     |||  || | | |   || |||  ||| | | |||||  || ||     | |   ||| |  |   |||  | || ||   ||| ||||||||||||||||||  | |||||||| |||||||| |||||||| ||||| || ||||||||||| |||||||||
tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcat---tataatattctt---tgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
     tgcttac  putative branch site (score: 2)
        ttactgtttttttttt  TA-rich tract