Sequence
atgc intronic sequence ATGC exonic sequence...gcaattttttacggcattggtttgctgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
Basic information
species | Glycine max |
transcript | GLYMA17G20610.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: AT3G50500.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaattttttacggcattggtttgctgttagtttctt---actctgatgaagttgcttactgttttttttttttt--ttgtgtatggtgttgttgt-gtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
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------tttaatggtggttacttactgttactatgattaaatgcttttgaaaagttttgatatttctcaataaatgatgatacttttttttatggttgttttgcagATTGATGAAAATGTTCAGAGGGAGATTATCAATCATAGATCATTGAGACATCCTAATATTGTTAGGTTTAAAGAG
upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: AT5G66880.1 (Arabidopsis thaliana), 3'ss of exon 1
gcaattttttacggcattggtttgctgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatgg--tgttgttgtgtg--tcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
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gaaattttg---gatattgaaatgatttttttagttggttttgagtgttctgctt-ttgtagattaggacagttgtgaatgacttgtaactatgggagttgcagATTGATGAAAATGTTCAAAGGGAGATCATTAACCACAGGTCACTAAGGCATCCTAATATTGTCAGATTTAAAGAG
upper sequence: GLYMA17G20610.4 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0197g00080.t01 (Vitis vinifera), 3'ss of exon 1
-----gcaattttttacggcattggtttgc-tgttagtttcttactctgatgaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
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tgaagccaatttagataggctatgatatccaccttggttatttaattttatgaatatgttttaaaatgtggatttctcat---tataatattctt---tgttgcagATTGATGAAAATGTTCAAAGGGAAATAATTAATCATAGGTCTCTCAGGCACCCCAACATTGTTAGGTTTAAAGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|17152867|gb|BM142800.1|BM142800EST: CGTCAAGTACATCGAAAGGGGTGATAAG ATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCAT
genomic: CGTCAAGTACATCGAAAGGGGTGATAAGgttgtttttg ... tgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gaagttgcttactgtttttttttttttttgtgtatggtgttgttgtgtgtcgcagATTGATGAAAATGTAAAGAGGGAAATCATTAATCACAGGTCTCTGAGGCATCCTAACATTGTTAGATTTAAAGAG
tgcttac putative branch site (score: 2)
ttactgtttttttttt TA-rich tract