Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttcattcatcaacaactatcaaattctctctttcaaattataatcattatttacttttccaattaattattacgttcaataacaattatactattaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT

Basic information

species Glycine max
transcript GLYMA17G18800.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|15664754|gb|BI702125.1|BI702125
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|151396856|gb|EV266729.1|EV266729
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192298672|gb|FG990968.1|FG990968
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|10844495|gb|BF067754.1|BF067754
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|11690188|gb|BF597864.1|BF597864
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|14125214|gb|BG789661.1|BG789661
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|16996333|gb|BM085705.1|BM085705
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192331915|gb|FK026699.1|FK026699
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|9565068|gb|BE474577.1|BE474577
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|12489965|gb|BG043486.1|BG043486
EST:     GACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAANGAGAGCANCGAGTGGCTTGAAA
genomic: GACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAA-GAGAGCA-CGAGT-GCTTGAAA
EST: gi|208293117|gb|GE096381.1|GE096381
EST:     TCAAAGATCTCGGTCACAAGGCTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|19052685|gb|BM731352.1|BM731352
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|7326739|gb|AW620537.1|AW620537
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|7326591|gb|AW620389.1|AW620389
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|6073074|gb|AW102461.1|AW102461
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|8284014|gb|BE021573.1|BE021573
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|21285555|gb|BQ473426.1|BQ473426
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|10233953|gb|BE802841.1|BE802841
EST:     CAAAGATCTCGGGCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: CAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|6916007|gb|AW397537.1|AW397537
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|13125541|gb|BG316111.1|BG316111
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|10233011|gb|BE801899.1|BE801899
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|193560383|gb|FK516834.1|FK516834
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|9902340|gb|BE611308.1|BE611308
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192299019|gb|FG992825.1|FG992825
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|6719304|gb|AW306951.1|AW306951
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|19053948|gb|BM732615.1|BM732615
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|37995048|gb|CF806637.1|CF806637
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|308098954|gb|HO760795.1|HO760795
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|10234308|gb|BE803196.1|BE803196
EST:     CAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: CAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|208128283|gb|GD921283.1|GD921283
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATGCTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|15815899|gb|BI788174.1|BI788174
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|193495034|gb|FK462308.1|FK462308
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192299084|gb|FG992860.1|FG992860
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|4290097|gb|AI438020.1|AI438020
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|151393265|gb|EV263140.1|EV263140
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|15816093|gb|BI788368.1|BI788368
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|11411713|gb|BF423783.1|BF423783
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|7686708|gb|AW757356.1|AW757356
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|15001155|gb|BI321969.1|BI321969
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192306106|gb|FG993682.1|FG993682
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|19269468|gb|BM885724.1|BM885724
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|192295646|gb|FG990500.1|FG990500
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|151397016|gb|EV266889.1|EV266889
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|5752909|gb|AI960196.1|AI960196
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|4290489|gb|AI438081.1|AI438081
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|193576297|gb|FK532722.1|FK532722
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|16106335|gb|BI894075.1|BI894075
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|14008595|gb|BG725199.1|BG725199
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
EST: gi|308098846|gb|HO760687.1|HO760687
EST:     TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAG                         TATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG
genomic: TCAAAGATCTCGGTCACAAGACTCTCCTTCAGAGTGATGCACTCTATCAGgttcattcat ... ttaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atttacttttccaattaattattacgttcaataacaattatactattaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT
                                           tattaat  putative branch site (score: 2)
            aattaattattacgtt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttcattcatcaacaactatcaaattctctctttcaaattataatcattatttacttttccaattaattattacgttcaataacaattatactattaattgcagTATATACTTGAAACCAGTGTCTATCCAAGAGAGCACGAGTGCTTGAAAGAGATACGCAAGATGACTGCAAAACACCCACT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGATG