1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttctagtggtctcatgagggtttggtagtattttgttttccgtttccttcttctttctcctctgtcccagcaagataactagtgctttccatgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATCTGGGAGGCTGGAAAGAATTCTTGAACAGTCATGATAAAAAGTTTGGGG
species | Glycine max |
transcript | GLYMA17G18400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAG GTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATEST: gi|209698652|gb|BW652465.1|BW652465
genomic: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAGgtaacttcct ... atgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
EST: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAG GTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATEST: gi|209707662|gb|BW676641.1|BW676641
genomic: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAGgtaacttcct ... atgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
EST: CGTCTCTGTTGTGCAACATAGAGGACAAGATAGAGACTGCAGACAAAAAG GTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATEST: gi|213616607|gb|DB971188.1|DB971188
genomic: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAGgtaacttcct ... atgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
EST: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAG GTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATEST: gi|8401814|gb|BE057448.1|BE057448
genomic: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAGgtaacttcct ... atgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
EST: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAG GTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
genomic: CGTCTCTGTTGTGCAACATGGAGGACAAGATAGAGACTGCAGACAAAAAGgtaacttcct ... atgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAAT
ccttcttctttctcctctgtcccagcaagataactagtgctttccatgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATCTGGGAGGCTGGAAAGAATTCTTGAACAGTCATGATAAAAAGTTTGGGG
agataac putative branch site (score: 3)
ctttccat putative PPT
aagataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttctagtggtctcatgagggtttggtagtattttgttttccgtttccttcttctttctcctctgtcccagcaagataactagtgctttccatgtgggtagGTGCTGGTTGATATTGTAAAATTAGCACAAAAAAGAGGCTTAAAGGGTAATCTGGGAGGCTGGAAAGAATTCTTGAACAGTCATGATAAAAAGTTTGGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - ctcatga
- - - - - - - - -gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctttc