Sequence
atgc intronic sequence ATGC exonic sequence...atgggatttatataatttctttaattagtctggtatatatttttataaatataataatgtttgaatagatgtgaattaactagttacccttaaacttcagTTCTGGAACATCTGCTGGGGAGAGAAAATTGATGCCAACAATTCGTCAAGAGATGGACCGTCGTCAATTACTTTACAGCCTTCTGATGCCTGTGATGAAC
Basic information
species | Glycine max |
transcript | GLYMA17G18080.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G18080.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00660.t01 (Vitis vinifera), 3'ss of exon 1
atgggatttatataatttctttaattagtctggtatatatttttataaatataataatgtttgaatagatgtgaattaactagttaccctt--aaacttcagTTCTGGAACATCTGCTGGGGAGAGAAAATTGATGCCAACAATTCGTCAAGAGATGGACCGTCGTCAATTACTTTACAGCCTTCTGATGCCTGTGATGAAC
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gtctgattc---tagcctctgtggt---cttaatataaatgtgtgtgc-tgtgtgactgtgtaagtgaatgttttttgattgttgggggtttgaatctgcagTTCTGGGACTTCTGCTGGTGAGAGGAAGCTTATGCCAACGATTCATGAAGAGTGGGATCGTCGCCAGAAACTTTACAGCCTTCTCATGCCAGTGATGAAC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.taaatataataatgtttgaatagatgtgaattaactagttacccttaaacttcagTTCTGGAACATCTGCTGGGGAGAGAAAATTGATGCCAACAATTCGTCAAGAGATGGACCGTCGTCAATTACTTTACAGCCTTCTGATGCCTGTGATGAAC
aattaac putative branch site (score: 2)
ttaccctt putative PPT
ataataatgtttgaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgggatttatataatttctttaattagtctggtatatatttttataaatataataatgtttgaatagatgtgaattaactagttacccttaaacttcagTTCTGGAACATCTGCTGGGGAGAGAAAATTGATGCCAACAATTCGTCAAGAGATGGACCGTCGTCAATTACTTTACAGCCTTCTGATGCCTGTGATGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - aaatataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - atgtttg