Sequence
atgc intronic sequence ATGC exonic sequencegtaaaaacctcttacgtcgtcgtttcacgctcttccttcatttcttcttcgccttttcaaatcaaattcggaaattcaagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC
Basic information
species | Glycine max |
transcript | GLYMA17G17990.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 1
lower sequence: AT3G50050.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaaaaacctcttacgtcgtcgtttcacgctcttccttcatttcttcttcgccttttcaaatcaaattcggaaattcaagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC
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-----------------------------gtaatctccttttccatatttcccgatctgggtcatgtaaagatgtctcttttatatacta-ttatatcgtatttgtagGTATTACACTACGAGGCTTTGGATTGGTACACCACCACAAATGTTTGCTCTTATAGTTGATTCTGGTAGTACTGTTACTTATGTTCCTTGTTCTGATTGT
upper sequence: GLYMA17G17990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00600.t01 (Vitis vinifera), 3'ss of exon 1
gtaaaaacctcttacgtcgtcgtttcacgctcttccttcatttcttcttcgccttttcaaatcaaattcggaaattcaagatttgtgt-gaattgaa-tggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC
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----------------------gtacccggtgttcctcccctcttttttttctcgattgcattcatttt---atttctgttcttgtgttgaattgaggtgcttcttttagGTATTACACTACGAGGATTTGGATCGGAACACCGCCTCAGACATTTGCGCTCATTGTTGATACGGGGAGTACTCTTACGTATGTTCCATGCTCTACGTGCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193667808|gb|FK610200.1|FK610200EST: CGCCACCCTAACGCGCGCATGAGGCTCCACGACGATCTCCTCCTCAACGG GTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTT
genomic: CGCCACCCTAACGCGCGCATGAGGCTCCACGACGATCTCCTCCTCAACGGgtaaaaacct ... gtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttttcaaatcaaattcggaaattcaagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC
ttttttt CT-rich tract
aaatcaaatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaaaaacctcttacgtcgtcgtttcacgctcttccttcatttcttcttcgccttttcaaatcaaattcggaaattcaagatttgtgtgaattgaatggtttttttagGTATTACACGACGCGGCTTTGGATCGGGACTCCTCCGCAGATGTTTGCGCTCATTGTTGATACGGGGAGCACTGTTACGTATGTTCCGTGCTCCACATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA