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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT

Basic information

species Glycine max
transcript GLYMA17G17520.2
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G112056_T01 (Zea mays), 3'ss of exon 1
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                                ||   |  | |      |     | |||    |||  |   |  |  | || ||   | || ||||       || ||  || |  |  ||| |   |  ||| |||| ||||  ||||||||| || | |||||||| |||||||| ||||| ||||||||||||||  |      ||    || ||||| ||| ||||||
-------------------------------------------------------------------------------gtaggcacatggagctggagctcggctttacactttgatccccagatttgaatgg---tgtaaggtt-------ttatttctgattcg--tctgtccgtgcagGAAGCAGGATGGGTATGAGGTGCTGCGGAAGGTGGGGAGGGGGAAGTACAGCGAGGTGTTCGAAGGGTTCTGGGCCAGGAGCGATGAGAGATGCGTCATT

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G138774_T01 (Zea mays), 3'ss of exon 2
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaat-gttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                                  |        ||   |  |  | |  ||     |    |  ||| | |  || ||  | || ||||       || ||  || || |  ||| |   |  ||| |||| ||||  || |||||| || | |||||||| |||||||| ||||| ||||||||||||||  | |    |     || ||| | ||| ||||||
---------------------------------------------------------------------------------gtaggcacacgaagctggagctcggctttacactgtgatccccagatttgaatgg--tgtaaggtt-------ttatttctgatgcg--tctgtccatgcagGAAGCAGGATGGGTACGAGGTGCTGCGGAAGGTGGGGAGGGGGAAGTACAGCGAGGTGTTCGAAGGGTTCCGGGTCGGGAGCGATGAAAGATGCGTCATT

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: GRMZM2G154799_T01 (Zea mays), 3'ss of exon 1
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttg-tgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                                             ||     |  |   |     |    ||| ||  || |     |  || |  | ||    | | |||||  || ||  ||| |   |  ||| |||| ||||  || |||||| || | |||||||| |||||||| ||||| ||||||||||||||  | |    |     || ||||| ||| ||||||
--------------------------------------------------------------------------------------------gtaggcgcacggagctggagctcggctttacactgtgatccccagatttgaatggtgtaaggttttatttctgatgcgtctgtccgtgcagGAAGCAGGATGGGTACGAGGTGCTGCGGAAGGTGGGGAGGGGGAAGTACAGCGAGGTGTTCGAAGGGTTCCGGGCCGGGAGCGATGAGAGATGCGTCATT

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: AT2G23070.1 (Arabidopsis thaliana), 3'ss of exon 1
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                              | ||| |    | |||  |  || || | ||||       |||  |  ||          || ||  | ||  ||||    ||    | | |  |       || |  || |||||||||||||||||||| ||||| || ||||| |||||||||||||| || |||||  ||||    || ||    ||||||||||| || 
----------------------------------------------------------------------------ggtctatgtgaactagattgttgaattgatatcttgag----tttgtatggtgttgttactgtttggtgtattagtgtttgagttagcttcattgatgccgc--agTGTACAGGATGATTATGAGGTGGTGAGGAAGGTAGGAAGGGGAAAATACAGTGAGGTCTTTGAAGGCATTCATGCTACTGATAACGAGAAATGTGTTATC

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: Vv07s0129g00270.t01 (Vitis vinifera), 3'ss of exon 1
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                             ||  |  ||   || ||| | | |   ||||   ||| |  || |   ||| | |  |||     ||   |  ||||     ||| ||||   | |||||| | |||         |  |||||||| || ||||||||||||||||| ||||| || ||||||||||||||||| |||||||| || || ||||||||||||  |||||| ||| | |||
------------------------------------------------------------gttcga--ttggataatttgtgtctggattggtcgatagaggtggt---tttatacgcttttaggtgtttgaccgaat-----gtttttgtg--tattattgat-tga---------tgcagGGAGCAGGACGATTATGAGGTGGTGAGGAAGGTTGGGAGGGGGAAATACAGTGAAGTGTTCGAGGGCGTGCACTGCACCGACAATGAGAAGTGTATTATT

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S63_208V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                                | | |  |||  | |||     | | |  ||   |   |||  | |  | ||  | || ||    ||||| || || | |  |  |   |  |   ||  || || ||||| ||||| |||||| |  | || || ||  ||||||||||||||||||| || ||||||||||||  |    || |||||   || || |||
-------------------------------------------------------------------------------atgtct-ctttacagaatggccctttatagttgagtaactttttacaagagaactgcatgta--tctgttgctgctgctctgatcatttttactggcttccagAGACCAAGACGATTACGAGGTGATACGTAAAGTAGGGCGGGGGAAATACAGTGAGGTTTTTGAAGGTGTTCACGCCGTGAACAGTGAGCGTTGCGTTATT

upper sequence: GLYMA17G17520.2 (Glycine max), 3'ss of exon 1
lower sequence: PP1S165_119V6.1 (Physcomitrella patens), 3'ss of exon 2
gtaacataacagattctccttcttcttttattgtttttccccccttcgattttcaaatacctttaaccttttttattttttatttattttggataatataaatgttttcttttttccttttccaaagtaaaaggga-atttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                                                                ||||  | ||| | |      |  |||  || ||   | |     || ||  |    | ||      || | |||||  | || | ||    |   |||  ||||| ||||| ||||| ||||| ||| | ||||||||  | ||||||||||||||||| || ||||||||  ||  |    |  |||||   || || || 
-------------------------------------------------------------------------------gtattcttattgtagagc---gacctttcattattgggtatatgtcagcaagtgaagtagttgtatcagtaggtgttga-actgatctgttcatcgatttccagGGACCAAGACGATTACGAGGTAGTGCGTAAGGTGGGGCGAGGGAAATACAGTGAGGTTTTTGAAGGTGTCAACGCCGTGAATAGTGAGCGTTGCGTTATG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22522067|gb|BU080878.1|BU080878
EST:     GTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGG                         GGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAG
genomic: GTTCGCCCCAAGGAATATTGGGACTACGAGTCCCTCAACGTCCAGTGGGGgtaacataac ... ttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taaaagggaatttagggttgttgttgttgttattgttgtgactctttttttttagGGAGCAAGATGATTATGAGGTGGTGAGAAAGGTGGGTAGGGGGAAATACAGTGAGGTGTTCGAAGGTGTTCACTGCACCGACGGTGAGAAATGTGTCATT
                                      tgactcttttttttt  CT-rich tract
                                        actcttttttttta  TA-rich tract