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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattaattaaacttacacattcatttttctcacaaccccaatcttctacaacgtataaccttataaaaaactttatacaagtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcagCTCTCATTCGACCTCCTAGAGTCATGGCTCGCAAAGAACCCTGACGTGGCAGGGTTCAAACGTGACGGCAAATCCATATTCAGAGAACTCGCTCTCTTCC

Basic information

species Glycine max
transcript GLYMA17G16990.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G16990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s0840g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaattaattaaacttacacattcatttttctcacaaccccaatcttctacaacgtataaccttataaaaaactttataca--agtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcagCTCTCATTCGACCTCCTAGAGTCATGGCTCGCAAAGAACCCTGACGTGGCAGGGTTCAAACGTGACGGCAAATCCATATTCAGAGAACTCGCTCTCTTCC
                                                || ||  | |  | ||  ||||||||  |  |     | |  ||  | |  |  ||||  |    ||  | ||||| |||   ||| ||||||||| ||||| || || ||||| ||||||||| | ||||| || |  || |||||||| || || ||  |||| ||||||||||| || ||||||||||
----------------------------------------------gttagaagattttccttttaaaaaaactacaatctttgatttcttgccaaaaatgcagtccct---tattttcatcttattgcgtcat-gcagCTCTCTTTCGATCTTCTGGAGTCCTGGCTCGCACAAAACCCAGATGCAGCTGGGTTCAAGCGAGATGGAGAATCGATATTCAGAGAGCTAGCTCTCTTCC

upper sequence: GLYMA17G16990.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s1437g00010.t01 (Vitis vinifera), 3'ss of exon 1
gtaattaattaaacttacacattcatttttctcacaaccccaatcttctacaacgtataaccttataaaaaactttataca--agtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcagCTCTCATTCGACCTCCTAGAGTCATGGCTCGCAAAGAACCCTGACGTGGCAGGGTTCAAACGTGACGGCAAATCCATATTCAGAGAACTCGCTCTCTTCC
                                                || ||  | |  | ||  |||||| |  |  |     | |  ||  | |  |  ||||  |    ||  | ||||| |||   ||| ||||||||| ||||| || || ||||| ||||||||| | ||||| || |  || |||||||| || || ||  |||| ||||||||||| || ||||||||||
----------------------------------------------gttagaagattttccttttaaaaaaaatacaatctttgatttcttgccaaaaatgcagtccct---tattttcatcttattgcgtcat-gcagCTCTCTTTCGATCTTCTGGAGTCCTGGCTCGCACAAAACCCAGATGCAGCTGGGTTCAAGCGAGATGGAGAATCGATATTCAGAGAGCTAGCTCTCTTCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtattgtgtaacattttgagtcaataaaaataataatctttttggaacattgcagCTCTCATTCGACCTCCTAGAGTCATGGCTCGCAAAGAACCCTGACGTGGCAGGGTTCAAACGTGACGGCAAATCCATATTCAGAGAACTCGCTCTCTTCC
     gtgtaac  putative branch site (score: 3)
        taacattttgagtcaa  TA-rich tract