1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatatatctatgtataaaattaaactatgaatgtgttataattaataagtactagctaaaaatggtgccatttgttttcaatgttgaaatcactatgcagGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTGCAATTAGAGCCAAATCTGGCAGATGGGTTGCTG
species | Glycine max |
transcript | GLYMA17G16410.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TAACTTTTAACTTTGACACCACCATGGCCTGCTTAGAAGTCAGCAAAGAG GTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATEST: gi|213604584|gb|DB966671.1|DB966671
genomic: TAACTTTTAACTTTGACACCACCATGGCCTGCTTAGAAGTCAGCAAAGAGgtatgttatt ... cactatgcagGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGAT
EST: TAACTTTTAACTTTGACACCACCATGGCCTGCTTAGAAGTCAGCAAAGAG GTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGAT
genomic: TAACTTTTAACTTTGACACCACCATGGCCTGCTTAGAAGTCAGCAAAGAGgtatgttatt ... cactatgcagGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGAT
taagtactagctaaaaatggtgccatttgttttcaatgttgaaatcactatgcagGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTGCAATTAGAGCCAAATCTGGCAGATGGGTTGCTG
agctaaa putative branch site (score: 3)
atttgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatatatctatgtataaaattaaactatgaatgtgttataattaataagtactagctaaaaatggtgccatttgttttcaatgttgaaatcactatgcagGTAAAGTTCAAAGGTGACACGGAAGAACTCACTCTTGATGGAAGTGTTGATTGGCATGGTCGCCCTGCAATTAGAGCCAAATCTGGCAGATGGGTTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - -ctatgta
- - - - - - - - aaattaaa
- - - - - - - - - - - - - - gaatgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggtgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa