1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtcactgcttagttataataatggtgttttgtttgaggtttcgatgtttggtttgaaataatgtggctgtcgttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTT
species | Glycine max |
transcript | GLYMA17G13470.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|298199036|gb|HO042399.1|HO042399
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|26058596|gb|CA801510.1|CA801510
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|17021868|gb|BM092902.1|BM092902
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|5057309|gb|AI735785.1|AI735785
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|298196562|gb|HO041305.1|HO041305
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|31562008|gb|CD487846.1|CD487846
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTAAGGTTGCTGAG GTTATATATNATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|26058595|gb|CA801509.1|CA801509
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|17400637|gb|BM177419.1|BM177419
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|19053744|gb|BM732411.1|BM732411
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|298173330|gb|HO016666.1|HO016666
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGEST: gi|120530752|gb|EH258885.1|EH258885
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGG
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|15203609|gb|BI426377.1|BI426377
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|120534064|gb|EH262197.1|EH262197
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCEST: gi|31467356|gb|CD409384.1|CD409384
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
EST: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAG GTNATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
genomic: AGAAATTGGCCTCGCTTTTCGAACAGGCTGGCACCGTTGAGGTTGCTGAGgtgagtcact ... gttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACC
ttttgtttgaggtttcgatgtttggtttgaaataatgtggctgtcgttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTT
ttgtttc CT-rich tract
tttgaaataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcactgcttagttataataatggtgttttgtttgaggtttcgatgtttggtttgaaataatgtggctgtcgttgtttcagGTTATATATAATAGGGCCACTGACCGGAGTCGCGGGTTCGGATTTGTTACCATGAGTACAATCGAAGAGCTTGAGAAGGCTGTCAAGATGTTCAGTGGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG