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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tattctgaggtggtggtgagagcataggttgagttaatgacagtgggatgacgttttgtttttaactatgagtggtacatgaatggatggctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTA

Basic information

species Glycine max
transcript GLYMA17G13440.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G13440.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G24740.1 (Arabidopsis thaliana), 3'ss of exon 1
--------tattctgaggtggtggtgagagcataggttgagttaatgacagtgggatgacgttttgtttttaactatgagtggtacatgaatggatggctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTA---
          || | || | ||    |   |   |   ||||    |  ||  ||||   |    ||||| | || |  ||  |       |  |||  | ||||||||||||||||||| |||||||||| |||||  |||| | ||| |||||||||||  ||||  | | ||| ||||| |||   | ||| ||||| | |||||   
acccttaaggttttaagatagtaa--atgactctgaacgagtcggcg-tagaaggatagtggcaggttttcatctgtctgttat-----ggtacatgaatatgtgtagGCTCAGGTAGGAATGTTTTGTGGGCAAGAGATTGGAAATATATCAAGCTTTGCATCTTCCGGAGCTCCTTCAGACAAT---AGTAGCTCTCTTTGTGTTAAGG

upper sequence: GLYMA17G13440.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g09500.t01 (Vitis vinifera), 3'ss of exon 1
tattctgaggtggtggtgagagcataggttgagttaatgacagtgggatgacgttttgttttta-actatgagtggtacatgaatggatggctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTA
 |   | |   || | | |   |  |||   |    || |  | || |  |  ||||  ||||| |   ||||||| |||||||||||||||| ||||||||||||| ||||  |||||||||||||||| ||||||| | |  |||||||||| ||||||| ||  | ||| ||  | || ||||||||| | ||||| |
-aaaatcactgggagcttacttctaagggacaaggtatcagcgaggtacaaaattttaattttatatcttgagtggaacatgaatggatggctatgtgtagGCTCAGCTAGGGATGTTTTGTGGACAAGAGGTTGGGAATGTGGCAAGCTTTGCACCTTCAAAGGCACACTCCGACCAAACTACTAGTTCTATGTTTGTAA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209715198|gb|BW668526.1|BW668526
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|192295348|gb|FG986002.1|FG986002
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|208156834|gb|GD956304.1|GD956304
EST:     GCCCGAGAAAGGGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|207714419|gb|GD695898.1|GD695898
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|6454636|gb|AW185319.1|AW185319
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|15286579|gb|BI470470.1|BI470470
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|17022467|gb|BM093501.1|BM093501
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|23064326|gb|BU579099.1|BU579099
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|9901661|gb|BE610629.1|BE610629
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
EST: gi|23064408|gb|BU579181.1|BU579181
EST:     GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAG                         GCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT
genomic: GCCCGAGAAAGAGAGCGAGATTGGGCTGGGACATCCCTGAGGTCCCCAAGgtaacttttt ... ctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatgacgttttgtttttaactatgagtggtacatgaatggatggctgtgtgtagGCTCAGGTAGGATTGTTTTGTGGACAAGATGTTGGGACTATTTCAAGCTTTGCTCCTTCAAGGGGTCCCTCAGAAAATACCACTAGTTCTCTATTTGTTA
              ttttaac  putative branch site (score: 2)
        ttttgtttttaactat  TA-rich tract