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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgttttcttttgctttttccctcttccttttctatcaaatcacaccttctgttgaatgtgcttcttttttctctttcttttcaactgataaacatgttatctatttttgcttctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT

Basic information

species Glycine max
transcript GLYMA17G10730.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10730.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g05990.t01 (Vitis vinifera), 3'ss of exon 1
gtatgttttcttttgctttttccctcttccttttctatcaaatcacaccttctgttgaatgtgcttcttttttctctttcttttcaactgataaacatgttatct--atttttgcttcta--ttgcagGCCTGTCATTAGTCTTGTTTATCCTCT
                          |||| ||   |  ||||    | ||  |   ||  |  | | |       |||  | |  |   | | | | | ||  |  |||| ||  | |   ||||||||||||| ||||||||| |||||||||
--------------------------ttccattg--aataaatggagcattaagggaaagattttccatggaaaaattttctatagaaacaaacagaggctaatttgatttctgtgtttgatttgcagGCCTGTCGTTAGTCTTGCTTATCCTCT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10237423|gb|BE806311.1|BE806311
EST:     GCCGGCAATTTCCTCAAGGTTCTTCTCAAAAACTTCGATGTCCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTTCTTCTCAAAAACTTCGATGTCCTTGCTGGgtatgttttc ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
EST: gi|58024372|gb|CX711113.1|CX711113
EST:     GCCGGCAATTTCCTCAAGGTTCTTCTCAAAAACTTCGATGTCCTTGCTGG                         GCCTGTCATTAGTCTTGTTTATCCTCT
genomic: GCCGGCAATTTCCTCAAGGTTCTTCTCAAAAACTTCGATGTCCTTGCTGGgtatgttttc ... tctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctctttcttttcaactgataaacatgttatctatttttgcttctattgcagGCCTGTCATTAGTCTTGTTTATCCTCT
                aactgat  putative branch site (score: 3)
                                 tctatttttgcttct  putative PPT
                     ataaacatgttatcta  TA-rich tract