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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttttcatcttctccccattcttgattatatatctgtcacaaaatcacatggtttgttgtgtgccttttttcacagGGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG

Basic information

species Glycine max
transcript GLYMA17G10680.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208155667|gb|GD953598.1|GD953598
EST:     GACAAATTACGGTGCTACAATTGTCTCAGTCATAACACCTGATAAACATG                         GGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG
genomic: GACAAATTACGGTGCTACAATTATCTCAGTCATAACACCTGATAAACATGgtttgttttc ... tttttcacagGGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG
EST: gi|193585629|gb|FK542079.1|FK542079
EST:     GACAAATTACGGTGCTACAATTATCTCAGTCATAACACCTGATAAACATG                         GGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG
genomic: GACAAATTACGGTGCTACAATTATCTCAGTCATAACACCTGATAAACATGgtttgttttc ... tttttcacagGGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgattatatatctgtcacaaaatcacatggtttgttgtgtgccttttttcacagGGAAATTAGCCGATATTGTTCTTGGCTACGATTCCATTGATTCTTATAAG
 tcttgat  putative branch site (score: 4)
                                        tgccttttttc  putative PPT
     tatatatct  TA-rich tract