1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
...gtacatatttctaaaatagtttactattactcgatttcatttctatagcttgtgatacaagtcttattgtgtattttgagtgctgaattcatttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGCTCTAGGGCTGCTGAAGTTTTGAACCTGG
species | Glycine max |
transcript | GLYMA17G10610.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGEST: gi|151393862|gb|EV263737.1|EV263737
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCACTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGEST: gi|7146726|gb|AW508648.1|AW508648
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGEST: gi|10709984|gb|BF009708.1|BF009708
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGEST: gi|209702140|gb|BW677940.1|BW677940
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGEST: gi|298165761|gb|HO008732.1|HO008732
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
EST: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAG GTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
genomic: GTTTCAACTCCACACAACCACAATGCCTTTGCTTCTTTCGCTTTCTCTAGgtatcttctt ... atttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGG
tagcttgtgatacaagtcttattgtgtattttgagtgctgaattcatttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGCTCTAGGGCTGCTGAAGTTTTGAACCTGG
ttcattttt CT-rich tract
ttattgtgtatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacatatttctaaaatagtttactattactcgatttcatttctatagcttgtgatacaagtcttattgtgtattttgagtgctgaattcatttttgtagGTATGCTCATTCATTACCATTTGCAACTGTAGAAGCAGAAGAGATATCAGGCTCTAGGGCTGCTGAAGTTTTGAACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - -gcttgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgaa