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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgtgtaaattcttaagatatttgttttttttaattttttgcggtgatgtttatttatggtaattcaaaagtgaattgagagtgcgtgatgttttgtttagGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTT

Basic information

species Glycine max
transcript GLYMA17G10200.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G10200.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv17s0000g07470.t01 (Vitis vinifera), 3'ss of exon 1
gtttgtgtaaattcttaagatatttgttttttt-taattttttgcggtgatgtttatttatggtaattcaaaagtgaattgagagtgcgtgatgttttgtttagGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTT
                    |  ||||||| || || || || | ||    ||||| || | ||  || ||| ||| |||||   || |      ||     |||||||    ||  | ||   ||||||||||||||||| ||| |||||| ||||||||||||||||  |||| || |||||||| ||  |||| ||||| |
-----------------gtttgattgttttgttgtagttgttggtggca--gtttactttttgtt-ttgaaatgtgtattgattatgtgctggacttg---cagGTGAAGGCTGTGAGAGATACTATGAATCAGATGTTGGGAGCTTGGAAGGAGATTCCTGATGTTTCCAATGATGTCTCGCCACCGCCGCAATCACAATCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtttatttatggtaattcaaaagtgaattgagagtgcgtgatgttttgtttagGTGAAATTAGTTCGGGACGTTATGAATCAGATGTTGGAAGCGTGGAAGCAGATTCCTGATGTTTCGGATGAAGTTTCGCCACCTCCTAAATCGCAATCTT
                                             ttttgttt  CT-rich tract
     tatttatggtaatt  TA-rich tract