Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|193425514|gb|FK386533.1|FK386533EST: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG CTACTGAGTGG-TGAAGGGAAGGCAAATGGAGGAAGTTCTGAACTATAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGA-CTATAAAA
EST:
gi|58022474|gb|CX709215.1|CX709215EST: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
EST:
gi|58022153|gb|CX708894.1|CX708894EST: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCG CTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
genomic: TCGATTCAAAACTTTCGGCTGTGGCTCCGCCATTGCTTCTTCCTCCGTCGgtaacgaaca ... gtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgttctattctttcaccattgagcttgtttctgatgtatctgtatgtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC
ttctgat putative branch site (score: 3)
tatgtatat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaacgaacattgctctctgttttctgatcttcattttgttctattctttcaccattgagcttgtttctgatgtatctgtatgtatatgcagCTACTGAGTGGGTGAAGGGAAGGCAAATGGAGGAAGTTCTGACTATAAAAAATAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA