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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtacctttattgattttattacttttctgtttgcaattcgctgaacgaaaacaaactgtgttttttttttttttttatcgttttcttgtgatagTGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGCAGTTCCCTACGGCGTCCCCGGACCCAACGGGTTCGGATCCGCACCCGTT

Basic information

species Glycine max
transcript GLYMA17G09270.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209724493|gb|BW662975.1|BW662975
EST:     CCCTACGACAATAGATATTCCGACGCCGCTTCTTTTCGCGGCCGTCGCAG                         TGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGC
genomic: CCCTACGACAATAGATATTCCGACGCCGCTTCTTTTCGCGGCCGTCGCAGgtacgtacct ... cttgtgatagTGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctgaacgaaaacaaactgtgttttttttttttttttatcgttttcttgtgatagTGATTTCGTTGGACCTATTCCGCCTCCGTCTTTCGTCGGCCGCGGCGGCGCAGTTCCCTACGGCGTCCCCGGACCCAACGGGTTCGGATCCGCACCCGTT
                ctgtgttttttttttt  CT-rich tract
        aaaacaaactgtgttt  TA-rich tract