1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...taggggtgactgattggatttgaaatgtattggcgtatttgtgtgtgtttattgatgtgatgctgaaaaggcgttttatgtttgtgaaaattcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTCTGGCAGTGGGTGTTACGGAGAAAGATTTGGCTAGAGATGCAAACTCGA
species | Glycine max |
transcript | GLYMA17G08150.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTEST: gi|298166473|gb|HO009912.1|HO009912
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTEST: gi|7684931|gb|AW755579.1|AW755579
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTEST: gi|151410948|gb|EV280763.1|EV280763
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTEST: gi|18041115|gb|BM309409.1|BM309409
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTEST: gi|213595368|gb|DB968458.1|DB968458
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
EST: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAG ATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
genomic: CACGTGCCACTCTCGGTCTCACACATCCTTCTAACATCGAAACACCCAAGgtcagtctaa ... ttcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATT
tgtttattgatgtgatgctgaaaaggcgttttatgtttgtgaaaattcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTCTGGCAGTGGGTGTTACGGAGAAAGATTTGGCTAGAGATGCAAACTCGA
tattgat putative branch site (score: 3)
ttttatgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taggggtgactgattggatttgaaatgtattggcgtatttgtgtgtgtttattgatgtgatgctgaaaaggcgttttatgtttgtgaaaattcgtggaagATCTCTTTTGGTTCTAAGGATGTTGATGTGACGGAATGGAAAGGGGACATTCTGGCAGTGGGTGTTACGGAGAAAGATTTGGCTAGAGATGCAAACTCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
-aggggtg
- - - - -ctgattg
- - - - - - - - - - - - - - - - - - - - gtgtgtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgt