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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttcgatctctatacacaatctctcatagctccagtcttcacttttttcatcttatatttagcttcgtgtattttcttccaaatttctaatataaacgattacgattttctcactctctattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG

Basic information

species Glycine max
transcript GLYMA17G07380.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163926470|gb|EH039217.1|EH039217
EST:     TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAG                         GTATTGATGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
genomic: TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAGgtttcgatct ... tattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
EST: gi|24136612|gb|BU927122.1|BU927122
EST:     TCGCCGAAGAAG                         GTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
genomic: TCGCCGAAGAAGgtttcgatct ... tattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
EST: gi|213600839|gb|DB956231.1|DB956231
EST:     TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAG                         GTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
genomic: TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAGgtttcgatct ... tattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
EST: gi|208208192|gb|GE003423.1|GE003423
EST:     TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAG                         GTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC
genomic: TATCCTAGTCCTTATCAGCTTCACTATTTCGATTGAAATCGCCGAAGAAGgtttcgatct ... tattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttcttccaaatttctaatataaacgattacgattttctcactctctattgcgcagGTATTGACGTCGATGATGAAAATGAAATTGGTGAAAACATTACTGCTTCTCCTTTGTGTGAAACTCTTCTGTTATGCAGTG
                                  ttctcac  putative branch site (score: 2)
                                ttttctcactctctat  CT-rich tract
       aaatttctaatataaa  TA-rich tract