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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgcgaacaacggcaacgtttgttcaattcaatttctgttttgattaacggtgttttggtgtggcagATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTT

Basic information

species Glycine max
transcript GLYMA17G05390.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G22750.1 (Arabidopsis thaliana), 3'ss of exon 1
---------------gtaatgcgaacaacggcaacgtttgttcaattcaatttctgttttgattaacggtgttttggtgtggcagATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTT
                |  |     | | |  || |||||||  ||   | || |    | | ||  | ||   |  ||||| |||||||||||||||||||||| ||||||||||||||| | || || ||| | ||  | ||  ||||||| || ||    || || |  |||||| ||| ||
gtgtgtttcacatcttttttatttgctatgttaa-gtttgttagatgggaattgttaactaacta-tgatgggctcttgtggtagATTGGTAGAATACCAAACGAGTGGGCTCGGTGTCTTCTACCACTTGTGAGAGACAAGAAAATTAGGATAGAAGGCAGTTGCAAGTCGGCGCCTGAAGCTT

upper sequence: GLYMA17G05390.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0061g01190.t01 (Vitis vinifera), 3'ss of exon 1
------------------------------gtaatgcgaacaacggcaacgtttgttcaattcaatttctgttttgattaacggtgttttggt-gtggcagATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTT
                               |||    |   |    || | || |   ||||   || | |||| || | |  | |  || |  |||||| | ||| | || ||||| || ||||||||||| |||||||| || ||| ||||| | ||||||| ||||||||||   ||||||  ||| ||| | || |
attccttgagataaatgcagctgtgattatttaaaagaattcaaaataatggttataatattctgattttcttttaat-atctttatggtgtttatggcagGTAGGTCGCATCCCAAATGAGTGGGCTCGGTGCCTTTTGCCGCTTGTGAGGGATAAGAAGGTTAAGATTGAGGGGTTTTGTAAAGCTGCTCCTGATGTGT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaacgtttgttcaattcaatttctgttttgattaacggtgttttggtgtggcagATTGGTAGAATACCAAACGAATGGGCTCGGTGTCTTTTGCCTCTCGTGCGGGATCATAAGGTTAGGATTGAGGGGCAGTGTAAATATGCGCCTAAAGTTT
                              gattaac  putative branch site (score: 2)
             aattcaattt  TA-rich tract