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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaacaaaacgataaccagattttctctgtctctgtgtctttctgggttaatgaatattattattattattattattactatgttgttgtttctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAG

Basic information

species Glycine max
transcript GLYMA17G05350.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|120533896|gb|EH262029.1|EH262029
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
EST: gi|120528906|gb|EH257040.1|EH257040
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
EST: gi|298188262|gb|HO034955.1|HO034955
EST:     TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAG                         GTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC
genomic: TCATCTTCCCCACGGTCCTAATACAAATCCCAATGTTCAACGAAAAAGAGgtaacaaaac ... tctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttaatgaatattattattattattattattactatgttgttgtttctgggccagGTTTACAAGGTGTCCATCGGAGCAGCTTGTGGGCTTTCATGGCCCAGTGACCGTCTCGTTATCCAAGTCCTGGACGATTCAACTGACACTGTCATTAAG
 ggttaat  putative branch site (score: 4)
                                        ttgtttct  putative PPT
       aatattattattatta  TA-rich tract