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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagaatatgaataaagatatatgctttctttgaagttgaaaattttgatgtaaagtttaatttatgagctaattttttattttttttgtatggatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCAT

Basic information

species Glycine max
transcript GLYMA17G05280.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G05280.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv06s0061g01310.t01 (Vitis vinifera), 3'ss of exon 1
---------gtgagaatatgaataaagatatatgctttctttgaagttg--aaaattttgatgtaaagtttaatt---tatgagct--aattttttatt--ttttttgtatggatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCAT
          ||    ||||  | |   ||| || | | |||  |||    | || | | || ||   || | ||   ||| |  |  |||  |||| |  |  || |     ||| || |||||| |||||| | || ||  | || |||||  | |||||||||||||| |||||||| ||||| || || ||||||||||||||||| ||   ||||
gtgagtttcatgtagttatgcttga--ttatttgatgtttttagagtaagcagaactctaatttagcattaatttgtctataatttgaaatggtttactgatacttagacaaaatgtttcagTTCCAATTGGTTTATATGGGTTCCAGCATTATGTTTCGATATTGGGTTCCTTGATTCTAATTCCACTAGTCATAGTTCCGGCAATGGGTGGTGATCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699682|gb|BW655748.1|BW655748
EST:     GTCGAGGCATTCGCATATGAAGTATGAGCTCAGAGATTCACCTGGTTTAG                         TTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGT
genomic: GTCGAGGCATTCGCATATGAAGTATGAGCTCAGAGATTCACCTGGTTTAGgtgagaatat ... gatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atgtaaagtttaatttatgagctaattttttattttttttgtatggatggtttagTTCCCATTGGTGTGTACGGTATTCAACATTACTTATCGATATTGGGTTCGTTGATTCTCATTCCGCTCGTTATAGTTCCGGCAATGGGAGGCTCTCAT
                   agctaat  putative branch site (score: 3)
     aagtttaatttatgag  TA-rich tract