1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acaaaaatgagatcaaatatctgttttatgcataaaaatttatttgtcaccaactgtgcttggaaatgaatctgattattttttttcttggatgaagaagGGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTCATTGCTGAAAAATTGGAACGGTCTAGAGTGAAAAAGGAAGGTACTCCTG
species | Glycine max |
transcript | GLYMA17G04640.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTGCTGCTGAAGCTAAGATATCAACTGTTGACATTGGCAACAATGGAAAG GGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTCEST: gi|27446067|gb|CA953190.1|CA953190
genomic: CTGCTGCTGAAGCTAAGATATCAACTGTTGACATTGGCAACAATGGAAAGgtgagaattt ... gatgaagaagGGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTC
EST: CTGCTGCTGAAGCTAAGATATCAACTGTTGACATTGGCAACAATGGAAAG GGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTC
genomic: CTGCTGCTGAAGCTAAGATATCAACTGTTGACATTGGCAACAATGGAAAGgtgagaattt ... gatgaagaagGGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTC
gtcaccaactgtgcttggaaatgaatctgattattttttttcttggatgaagaagGGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTCATTGCTGAAAAATTGGAACGGTCTAGAGTGAAAAAGGAAGGTACTCCTG
atctgat putative branch site (score: 4)
aaatgaatctgattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaaaaatgagatcaaatatctgttttatgcataaaaatttatttgtcaccaactgtgcttggaaatgaatctgattattttttttcttggatgaagaagGGGCCAATTGGAGAACACCAGAGTCCCAAATTTAAAGATATACAGAAACTCATTGCTGAAAAATTGGAACGGTCTAGAGTGAAAAAGGAAGGTACTCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
acaaaaa
- - - - - - - - - - - - - - tgcataa
- - - - - - - - - - - - - - - - - - - - - - - -caccaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - tgcttgg