1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gtctattcaatcaggaccttattctcttgtctcattagtgtttatggacaagtttatctaaaactgggcctagttaatgatgggtgcatttttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCACA
species | Glycine max |
transcript | GLYMA17G04190.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCACTGCTGCTCTTGACAATTTCTACTTCGATTCTGAAGTTGGCGGCAAG ATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCEST: gi|209699735|gb|BW655774.1|BW655774
genomic: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGgtctttccct ... tttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATC
EST: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAG ATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCEST: gi|18735320|gb|BM528697.1|BM528697
genomic: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGgtctttccct ... tttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATC
EST: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAG ATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCEST: gi|23052926|gb|BU577417.1|BU577417
genomic: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGgtctttccct ... tttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATC
EST: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAG ATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATC
genomic: TCACTGCTGCTCTTGACAAGTACGACTTCGATTCTGAAGTTGGCGGCAAGgtctttccct ... tttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATC
ggacaagtttatctaaaactgggcctagttaatgatgggtgcatttttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCACA
tttttcactc CT-rich tract
tttatctaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctattcaatcaggaccttattctcttgtctcattagtgtttatggacaagtttatctaaaactgggcctagttaatgatgggtgcatttttcactcagATTAAAGGCACTGTGTTCTACACAGATAACAATGGAGCAGTTGTTGATATCACTGCAAAGTCTTCGGCATATTTGCCACTGCAAGAGGCGTGCATCCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- ctattca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgggtgc