Sequence
atgc intronic sequence ATGC exonic sequencegtacatacatctccttctttattaactactcattcatttttgtcttttttattattctgctctgtagATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
Basic information
| species | Glycine max |
| transcript | GLYMA17G01820.1 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 1
lower sequence: LOC_Os03g36790.1 (Oryza sativa), 3'ss of exon 1
--------------------------------gtacatacatctccttctttattaactactcattcatttttgtcttttttattattctgctct-gtagATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
|| || | || ||| | || | || ||| | | || | | || |||||||| | |||||||| | |||| ||||| | |||||||||||| |||||| |||| ||||| |||||||| |||| |||||||
gatgtggtaattgacattattttattattatcttatggtgattttacctttaattgaacttccaagatgatgagtggccacaatttctttccttttgaagGTTCAATTGATCAGAATTCAGTTGCGAGTGCCTGAATTTGGTTGGACTACCCAGAAGGTTTTCCATCTGATGAACTTTGTTGTAAACGGAG
upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 1
lower sequence: AT4G21790.1 (Arabidopsis thaliana), 3'ss of exon 1
-------------------------gtacatacatctccttcttta-ttaactactcattcatttttgtcttttttatt--------attctgctctgtagATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
||| | || || |||| ||| | |||| || | |||| || ||| || | |||| ||||| || | || || ||| | ||||| ||||||||||||||||||||||||||| | |||||||| |||||||| | ||||| ||||
ttgtatagtttgattgattgtttctgta-gtttatttctgggtttagttagttgtgttgcaatttctgaccttttgtttgaaatgggattatgattggtagGTTCAACTGATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAG
upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv00s2255g00010.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------gtacatacatctccttctttattaactactcattcatttt-----tgtctt---ttttattattctgctctgt--agATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
| | | ||| || || | | || | || | || || ||| ||| | ||| ||| |||||||| || | || ||| || | ||||| || |||||||||||||| || |||||| |||| ||||| ||||||||||| ||||| ||||
gaattgtttttcactgccgtgatttgtggagttgagcttgattgttgagaaatcttatgttgtgcggttgactaagatttcattgatgtgcactgcgcagATTCAACTGATAAGGATTGAACTGAGAGTGCCAGAGTATGGTTGGACGACGCAGAAGGTTTTCCATCTTATGAACTTCATCGTCAATGGAG
upper sequence: GLYMA17G01820.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv10s0116g00020.t01 (Vitis vinifera), 3'ss of exon 1
-----------------------gtacatacatctccttctttattaactactcattcatttt-----tgtctt---ttttattattctgctctgt--agATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
| | | ||| || || | | || | || | || || ||| ||| | ||| ||| |||||||| || | || ||| || | ||||| || |||||||||||||| || |||||| |||| ||||| ||||||||||| ||||| ||||
gaattgtttttcactgtcgtgatttgtggagttgagcttgattgttgagaaatcttatgttgtgcggttgactaagatttcattgatgtgcactgcgcagATTCAACTGATAAGGATTGAACTGAGAGTGCCAGAGTATGGTTGGACGACGCAGAAGGTTTTCCATCTTATGAACTTCATCGTCAATGGAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|24135976|gb|BU926486.1|BU926486EST: TTTTCTACTTCCTATGCGCTGCTTATGCTCTTGTCTCTTCCACCGCTTTG ATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACT
genomic: TTTTCTACTTCCTATGCGCTGCTTATGCTCTTGTCTCTTCCACCGCTTTGgtacatacat ... tgctctgtagATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttctttattaactactcattcatttttgtcttttttattattctgctctgtagATTCAATTGGTTAGAATTCAAGTTAGAGTACCTGAGTATGGTTGGACTACTCAGAAGATTTTTCATCTCATGAACTTCATTGTCAACGGAG
tattaac putative branch site (score: 1)
tttttgtcttttttat putative PPT
tcattcatttttgtct TA-rich tract
