1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attgaaacttcagttctgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTG
species | Glycine max |
transcript | GLYMA17G00740.2 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AATTGATGCATTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATT GTCGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGEST: gi|254340112|gb|GR858237.1|GR858237
genomic: AATTGATGCATTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATTgtcggttagc ... ttttatggagCA-GCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATG
EST: AGATTTTCCATTTCTCGATAACTCCATTGTEST: gi|193650904|gb|FK598519.1|FK598519
genomic: AGATTTTCCATTTCTCGATAACTCCA-T-Tgtcggttagc ... ttttatgga
EST: ATTGATGCAATTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATT CA--AACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTEST: gi|193578508|gb|FK534788.1|FK534788
genomic: ATTGATGCA-TTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATTgtcggttagc ... ttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCT
EST: AATTGATGCATTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATT CA--A-CATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCT
genomic: AATTGATGCATTATTTCTCTTCAGATTTTCCATTTCTCGATAACTCCATTgtcggttagc ... ttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCT
tttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTG
tgtttgttcctctttt CT-rich tract
aaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attgaaacttcagttctgcttcttctgcagtttcaaggttgtttgtttattttctcacgaggtgaaattgattgatgtgtttgttcctctttttatggagCAGCAACATGGCTCAACAACAGGAGGACGAAATGGAGTATGTTGCTGATGATAATGAAATGGCGGAAGTAGAAGATGACATGTATTTCCGTGGTAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - -ttctgct
- - - - - - - - - - -cttctgc
- - - - - - - - - - - - - - - - - - - -tgtttgt