Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactctctatttcttcactttaccaacaataaacaaactattctacttatctcctcttttcattttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCT

Basic information

species Glycine max
transcript GLYMA17G00710.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00710.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G49720.1 (Arabidopsis thaliana), 3'ss of exon 3
------------------------------------------gtactctctatttcttcactttaccaacaataaacaaactattct--acttatctcctcttttcattttatttagGTT-CTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCT
                                           || ||     ||||| |  | |    |  ||| || |||| |||  |||  | |       |  |   ||||  ||| ||  | || || ||||||||||| || |||||||| ||||| |||||||||||| |||| || || |||||||||||| |||||||||||||||| |
gtcagtccacacataacaacctgctgtgtttatgtttcttagatattcatgtcttcttga--tcatttgccttaaccatactactcttgactcttttgaatcccttttgcgattttagTTGCTGTTGAGCCGGTTGAGGTTGTTTCTGAGTCCTGGATATCCATATGAAGAAATTCTAAGGACCTTCCACAATCAGACCAGCATAGTCATGTGCTCAT

upper sequence: GLYMA17G00710.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0035g02180.t01 (Vitis vinifera), 3'ss of exon 3
------------------------gtactctctatttcttcactttaccaaca-ataaacaaactattct--acttatctcctcttttcattttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCT
                        | | |   | |||       | |  |||  ||         |||    |  |   |  | ||||  | ||| |||||| || || || |||||||| |||||| | || ||||| ||||| |||||||||||| | || |||||||||||||| ||| ||||| | |||||||| |
tttgcatgttgatcaaataaaattggaattattgtttgcaagagtcaaaaactcatggctggttcattgctgatatgctttatgtttttttcttaattagGTGCTCCTAAGCCGTTTGAGATTGTTCTTGAGCCCTGGGTATCCATATGAAGAAATTCTGAGGACATTTCACAATCAAACCAGCATAATTATGTGCTCAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|192293937|gb|FG986146.1|FG986146
EST:     GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
genomic: GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAGgtactctcta ... ttttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
EST: gi|8825948|gb|BE209678.1|BE209678
EST:     GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
genomic: GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAGgtactctcta ... ttttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
EST: gi|192317016|gb|FK010919.1|FK010919
EST:     AGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
genomic: AGCTGGGATAACAAGCTTACTGGTGCTCAGgtactctcta ... ttttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
EST: gi|298195451|gb|HO039282.1|HO039282
EST:     GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
genomic: GCCCCGACTATGGCGTCCTCAGCTGGGATAACAAGCTTACTGGTGCTCAGgtactctcta ... ttttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
EST: gi|26047244|gb|CA784103.1|CA784103
EST:     AGCTGGGATAACAAGCTTACTGGTGCTCAG                         GTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA
genomic: AGCTGGGATAACAAGCTTACTGGTGCTCAGgtactctcta ... ttttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctttaccaacaataaacaaactattctacttatctcctcttttcattttatttagGTTCTTCTCAGTCGTTTGAGGTTGTTCCTCAGTCCTGGTTATCCCTATGAAGAAATTTTAAGCACATTTCACAATCAGACCGGCATAGTCATGTGCTCCT
                       ttctacttatctcctc  CT-rich tract
                                     tcttttcattttattt  TA-rich tract