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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccctctctctctctctctctctctctctctctctaattatttaattaattagttgctgatctccctcttgatcaattgcagGGTTGCAAGCATTTGAGATAATGGCAATAGCGGCAGTGGGAAACAATCTGATAACTTATGTGGCCAATGACATGCACTTCCCTTTGTCCAAGGCTGCCAA

Basic information

species Glycine max
transcript GLYMA17G00550.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA17G00550.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv12s0035g01820.t01 (Vitis vinifera), 3'ss of exon 1
------------------------------------------------------------------------------gtccctctctctctctctctctc----tctctctctctctaattatttaattaattagttgct---gatctccctcttgatcaattgcagGGTTGCAAGCATTTGAGATAATGGCAATAGCGGCAGTGGGAAACAATCTGATAACTTATGTGGCCAATGACATGCACTTCCCTTTGTCCAAGGCTGCCAA
                                                                              ||   | |     | |   |       |   |   | |||   ||| ||  |  |      ||   ||| |   |  |  |   |||||||| | |||||||||||||| |||| ||| || ||||| || ||||| |||||||| ||||||   || || ||||||||||| ||||| | | |||| ||
gtttgtatctctctttggctcatgggtttggttcatgggttgatgtacttgttgagaaaaagtggttaatggaagtgggttttttttatggtgtagtttgtagaattgtttcatttcttgatatatatgtggtggtcgactcaggatttttgtgatttttttttgcagGGCTTCAAGCATTTGAGATTATGGGAATTGCAGCAGTAGGGAACAACCTGATAACATATGTGATAAACGAGATGCACTTCCCCTTGTCAACGTCTGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctctctctaattatttaattaattagttgctgatctccctcttgatcaattgcagGGTTGCAAGCATTTGAGATAATGGCAATAGCGGCAGTGGGAAACAATCTGATAACTTATGTGGCCAATGACATGCACTTCCCTTTGTCCAAGGCTGCCAA
                                 tctccctcttgatc  CT-rich tract
       taattatttaattaat  TA-rich tract