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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagatgttttcatttccctctccaagcagttatgttgtgttgtgctgagatttgattttctataagcagGTCCAGATCTTAATCAAGAGGAGTGAGTTTTGTTTTTCCAGCCATGACGCCGCTGGTGAGTCTAAGCCTTTCTCTCAGATTTACGCTTAACAGAGTTACA

Basic information

species Glycine max
transcript GLYMA17G00470.4
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|209699367|gb|BW664086.1|BW664086
EST:     GGAGCAGTTGTGCTTGGGAAGAACGCTCGCTCGCACT                         GTCCAGATCTTAATCAAGAGGAGTGAGTTTTGTTTTTCCAGCCATGACGCC
genomic: GGAGCAGTTGTGCTTGGGAAGAACGCTCGCTCGCACTgtaagatgtt ... ctataagcagGTCCAGATCTTAATCAAGAGGAGTGAGTTTTGTTTTTCCAGCCATGACGCC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tccctctccaagcagttatgttgtgttgtgctgagatttgattttctataagcagGTCCAGATCTTAATCAAGAGGAGTGAGTTTTGTTTTTCCAGCCATGACGCCGCTGGTGAGTCTAAGCCTTTCTCTCAGATTTACGCTTAACAGAGTTACA
                                   atttgat  putative branch site (score: 5)
                                         ttttctat  CT-rich tract
                                   atttgattttctataa  TA-rich tract