1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtcttcttttataatttatggtaattgaaattacttgtatataatgttatatataattacaattagaatgttatctgatttgaccattggctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTC
species | Glycine max |
transcript | GLYMA17G00250.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|151409763|gb|EV279571.1|EV279571
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|298194297|gb|HO040945.1|HO040945
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|254326666|gb|GR832818.1|GR832818
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|298184274|gb|HO029487.1|HO029487
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCGCGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|298166707|gb|HO010146.1|HO010146
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|192326423|gb|FK015925.1|FK015925
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAACCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|298178229|gb|HO023964.1|HO023964
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|7795909|gb|AW781306.1|AW781306
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTEST: gi|15286015|gb|BI469906.1|BI469906
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
EST: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACG GAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
genomic: CAATCTCACATCTCTCGTCGCCACCGCCGCGCCGCACGGAGGCACCCACGgtgagttctc ... gctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACT
tgttatatataattacaattagaatgttatctgatttgaccattggctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTC
atttgac putative branch site (score: 4)
tatataattacaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtcttcttttataatttatggtaattgaaattacttgtatataatgttatatataattacaattagaatgttatctgatttgaccattggctcaactagGAACCAATCTAGCCATCAGTTGAAACAGTGAGCTTACAAAAAATGGCAACTGCACCTGCACAAATTCCTACAAGCTTTGGCCATGAGTTGAGGGCTTGTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT