1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctcttctgtgatttccaaattcccttgtttattctctctgactttctctttgaattttatggattttgacacatttgttgtgccgaaattctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG
species | Glycine max |
transcript | GLYMA16G34660.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCGGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|192302694|gb|FG993714.1|FG993714
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|22524321|gb|BU083132.1|BU083132
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|6072588|gb|AW101975.1|AW101975
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: TCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|22524199|gb|BU083010.1|BU083010
genomic: TCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|22524381|gb|BU083192.1|BU083192
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|23732021|gb|BU764165.1|BU764165
genomic: AGGCAACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: ACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|151400455|gb|EV270269.1|EV270269
genomic: ACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|192302695|gb|FG993715.1|FG993715
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: TTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGEST: gi|151400687|gb|EV270501.1|EV270501
genomic: TTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
EST: AACGCCCATTTCAGCTCAAATCTGCAAACTGGGCTTTTTCCCAACG GGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
genomic: AACGCTCATTTCAGCTCAAATCTGCAAACTAGGCTTTTTCCCAACGgtgggtttta ... ctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATG
ctctttgaattttatggattttgacacatttgttgtgccgaaattctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG
ttttgac putative branch site (score: 3)
ttctgctt putative PPT
aattttatggatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcttctgtgatttccaaattcccttgtttattctctctgactttctctttgaattttatggattttgacacatttgttgtgccgaaattctgcttgcagGGTTCAGTTTATTCAAGTTTTACAATTTCGTGGCTCTGAAACTATTAGATGGGGAATTGTTTGCGCAAG
-tcttctg
- - - - - - - ccaaatt
- - - - - - - - - - -cccttgt
- - - - - - - - - - - - - - - - -ctctctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgacaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttgtgcc