1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtgctagagagaatcgaaaacagcagcattttctatttgtgtttattttttcttcattcttgttgtgtatgtgaatttgaacatttgaatggcgttaatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTGAATTGGCGGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
species | Glycine max |
transcript | GLYMA16G33240.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTEST: gi|298190501|gb|HO032622.1|HO032622
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACAAGGTTCTGACTCGTEST: gi|20812287|gb|BQ296765.1|BQ296765
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACTCGTEST: gi|24135528|gb|BU926038.1|BU926038
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACTCGTEST: gi|4313574|gb|AI460693.1|AI460693
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTEST: gi|6566862|gb|AW234494.1|AW234494
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACTCGTEST: gi|193341426|gb|FK308388.1|FK308388
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTEST: gi|208306439|gb|GE104448.1|GE104448
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTEST: gi|209709418|gb|BW668360.1|BW668360
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
EST: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAG TTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACTCGT
genomic: GTTCATTTCCAGTGTCAAACATGGCGTCTCAGATGAGCAAGAAGAGAAAGgtaagtgcta ... taatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGT
tcttcattcttgttgtgtatgtgaatttgaacatttgaatggcgttaatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTGAATTGGCGGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
cgttaat putative branch site (score: 4)
aatttgaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgctagagagaatcgaaaacagcagcattttctatttgtgtttattttttcttcattcttgttgtgtatgtgaatttgaacatttgaatggcgttaatgtgtagTTTGTTGCGGACGGAGTGTTCTTCGCCGAACTGAACGAGGTTCTGACACGTGAATTGGCGGAGGACGGTTACTCCGGCGTGGAAGTTAGGGTTACGCCGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG