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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtactaaaattctgatttttttagaaaaaaataaattatacccttttttttctattttattttgttgttgttttatatatgcataatatgaaggctaaataatgttttattatttgtgtgtttaaaagATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGTTCATCGCCTAAGTTCACTACGGATAAGATTGGTATTACGTTTGGCGATG

Basic information

species Glycine max
transcript GLYMA16G32740.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58014775|gb|CX701517.1|CX701517
EST:     CTTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAG                         ATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGT
genomic: CTTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAGgtactaaaat ... tgtttaaaagATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGT
EST: gi|193346664|gb|FK312130.1|FK312130
EST:     TTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAG                         ATGAAGACTGCAGCGAA
genomic: TTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAGgtactaaaat ... tgtttaaaagATGAAGACTGCAGCGAA
EST: gi|192295066|gb|FG986785.1|FG986785
EST:     CTTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAG                         ATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGT
genomic: CTTCTGTGCAACCTCATGCAGCTGAATCTTTCTCTGTTGGATATATTCAGgtactaaaat ... tgtttaaaagATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatatatgcataatatgaaggctaaataatgttttattatttgtgtgtttaaaagATGAAGACTGCAGCGAACTGTTCTTACCTGGTAGTTATATCTACGAGTTGTTCATCGCCTAAGTTCACTACGGATAAGATTGGTATTACGTTTGGCGATG
                   ggctaaa  putative branch site (score: 3)
                      taaataatgttttatt  TA-rich tract