1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tgactatcaatgtggttcttgttcattgttgagttttattttgctgtttttataatttgagcttgatctgctgatacaactgatttaatctatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAACAAACTGTTGCTCATTATGCATCCTGTCGAAGTGCTGAAGCAATACAT
species | Glycine max |
transcript | GLYMA16G32650.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTCATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|208321123|gb|GE118658.1|GE118658
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCCCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|16105813|gb|BI893553.1|BI893553
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|151407645|gb|EV277460.1|EV277460
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|17401661|gb|BM178443.1|BM178443
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|9901713|gb|BE610681.1|BE610681
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|209726268|gb|BW680205.1|BW680205
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTEST: gi|298174241|gb|HO017577.1|HO017577
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACT
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|298188640|gb|HO035333.1|HO035333
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|19348539|gb|BM893071.1|BM893071
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|23732340|gb|BU764330.1|BU764330
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|298190103|gb|HO032224.1|HO032224
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|298169753|gb|HO021113.1|HO021113
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|17022178|gb|BM093212.1|BM093212
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|298178403|gb|HO024138.1|HO024138
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAEST: gi|298195413|gb|HO039244.1|HO039244
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
EST: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAG GGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
genomic: TGGATGGGATGGAACCCTCACCACTCCTCTTCGGTTTCCTCCACTTCAAGgtatataaag ... tatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAA
gtttttataatttgagcttgatctgctgatacaactgatttaatctatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAACAAACTGTTGCTCATTATGCATCCTGTCGAAGTGCTGAAGCAATACAT
atttaatctatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactatcaatgtggttcttgttcattgttgagttttattttgctgtttttataatttgagcttgatctgctgatacaactgatttaatctatgattcagGGGTGGCTATACTGTGCTTATAAACACTTGGAGGCATAAATCTCTTCTGAAACAAACTGTTGCTCATTATGCATCCTGTCGAAGTGCTGAAGCAATACAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - -caatgtg
- - - - - - - gttcttg
- - - - - - - - - - - - - tgttgag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - gagcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgctga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caactga