Sequence
atgc intronic sequence ATGC exonic sequence...cacaataacagctgttttttgtttttcctttttttttttggttatctgatatggttaaagttttctgggttgtttagggttattgtgatggttttttcagGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAAGAGAGATGAAATGA
Basic information
species | Glycine max |
transcript | GLYMA16G32620.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151399290|gb|EV269161.1|EV269161EST: CTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAG GGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAG
genomic: CTACCTTCTATGCCTCTCTTAGATCCCTTCTCCCTCTTGAGTTCATCAAGgtgtgaaaaa ... gttttttcagGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctgatatggttaaagttttctgggttgtttagggttattgtgatggttttttcagGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAAGAGAGATGAAATGA
atctgat putative branch site (score: 4)
ttttttc putative PPT
ttaaagtttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cacaataacagctgttttttgtttttcctttttttttttggttatctgatatggttaaagttttctgggttgtttagggttattgtgatggttttttcagGGAAAGCGTTCAATATCTGACCACATGAACGAGGCAGCGAATTACATAAAGCACATGCAGAACAATATCAAAGAACTTGGTGCCAAGAGAGATGAAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - cagctgt
- - - - - - - - - - - - - - - - - - - - - - - tgatatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gggttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg