Sequence
atgc intronic sequence ATGC exonic sequence...aacatggccttattttaacttgtcattaggtgtctctctaattagtttagttccataactactcaattgatagtatggttgccttggtttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTATAAGGCTCCCCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA
Basic information
species | Glycine max |
transcript | GLYMA16G32400.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GLYMA16G32400.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv16s0100g00330.t01 (Vitis vinifera), 3'ss of exon 1
aacatggccttattttaacttgtcattaggtgtctctctaattagtttagttccataactactcaat--tgatagtatggttgcc-ttggtttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTATAAGGCTCCCCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA
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------gtggattccgaaacttccattaatttgattgataagttgatta-ttgtgaagcaacttagagacgataatatggtttttgcctgtgattttg--tagGTTGATCTTGAATTCAAGGCTAAGTTTTTGTTTTCGGTGGGGAATATCTACAGAGCGCCTCCTTTGATGGTGGCCACGGTGTTGACGTCGGAGGAATCAGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|151406613|gb|EV276428.1|EV276428EST: ATATAGTTCCAGAGGCATTCCATGGAAGCATTAACCAAGAATCTGGCAAG GTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTAT
genomic: ATATAGTTCCAGAGGCATTCCATGGAAGCATTAACCAAGAATCTGGCAAGgtaaaacata ... ttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTAT
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttagttccataactactcaattgatagtatggttgccttggtttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTATAAGGCTCCCCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA
ttttttt CT-rich tract
tttttttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
aacatggccttattttaacttgtcattaggtgtctctctaattagtttagttccataactactcaattgatagtatggttgccttggtttttttaaccagGTTGATCTTGAGTTCAAGGCCAAGTTCTTGTTTTCTGCCGGTAGTCTCTATAAGGCTCCCCCATTGATGGTGAAGACAGTGTTGACATCTGAAGAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- catggcc
- - - - - - - - - cttgtca
- - - - - - - - - - - - - - -gtgtctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctactca