1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtattcattctccttctctccctcattttatttttccttttttttttccaagttcctttattgatgatgattgcatatttgcatttagtattcaccaagcttattttcaaatcatttgcttacttaattctgtgttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG
species | Glycine max |
transcript | GLYMA16G32360.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGEST: gi|213620089|gb|DB965395.1|DB965395
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTTCTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGEST: gi|151395176|gb|EV265047.1|EV265047
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGEST: gi|6482005|gb|AW201276.1|AW201276
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGEST: gi|4287428|gb|AI441188.1|AI441188
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGEST: gi|213605714|gb|DB972334.1|DB972334
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
EST: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTTCTTTGG GACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
genomic: TGTTGGAATGAACACTCTCAAGATTCAGCCTTTCAAGCTTCCTACTTTGGgtattcattc ... gttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTG
tattcaccaagcttattttcaaatcatttgcttacttaattctgtgttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG
ttattttcaaatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattcattctccttctctccctcattttatttttccttttttttttccaagttcctttattgatgatgattgcatatttgcatttagtattcaccaagcttattttcaaatcatttgcttacttaattctgtgttttggaagGACCCCATGATGTCAGAGTTAGAATGAAGGCTGTTGGTATCTGTGGGAGTGATGTTCACTACCTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT