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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttctttcatgattctcctatgaaaggttgaatggtattactgctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCTGTCAATCTTGCTATACAGTTTCATGGTTGGGTATCCTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGC

Basic information

species Glycine max
transcript GLYMA16G32340.1
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA16G32340.1 (Glycine max), 3'ss of exon 1
lower sequence: AT5G62130.2 (Arabidopsis thaliana), 3'ss of exon 4
gttctttcatgattctcctatgaaaggttgaatggtattactgctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCTGTCAATCTTGCTATACAGTTTCATGGTTGGGTATCCTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGC
                    | |     |   ||  |||    |||     || || | ||    |  || |    || |  | | |||  ||||||||||||||  |||||||| | |||||| |  ||||||| || |||||||| || ||||| || | |||||| || || |||||||| |||||| |   ||
-------------------gtaatcttctctttgcaattctctctacaa--gtctcagctttaagtattgttcctcatctatt-tgtatattttcagGAACCTGTCTCTGTTGCTTTCTCTGCTCTGGATCTTGCAATGCAGTTTCAAGGATGGGTCTCATATTTCATCCTCGTTTACTATAAATTGCCTCTCCAGC

upper sequence: GLYMA16G32340.1 (Glycine max), 3'ss of exon 1
lower sequence: Vv16s0100g00360.t01 (Vitis vinifera), 3'ss of exon 2
gttctttcatgattctcctatgaaaggttgaatggtattactgctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCTGTCAATCTTGCTATACAGTTTCATGGTTGGGTATCCTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGC
||  ||  ||  | ||   ||   |  ||   | |    | |  ||| | | | |    |  |  || |  ||      || |||  ||| | ||||||||||||  ||||||||||  |  |  ||||||||||||| || |||||||||||||| || ||| |||| ||| | || || ||||||||||| ||||
gtctttatattttacttacatcggaacttaggttg----attcttaaatgtatgtacaat-atacttattttgaatgagtgttattcatgttctcagGAACCTGTTTCTGTTGCTCTAGCCACACTCAATCTTGCTATGCAATTTCATGGTTGGGTGTCATTTCTCATCCTTCTTTATTACAAGTTGCCTTTAAGGC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctaagtttgtttcggtttgtgattgtggtgtggatatgctatatatgatttcagGAACCTGTGGCTGTTGCTCTGTCTGCTGTCAATCTTGCTATACAGTTTCATGGTTGGGTATCCTTTTTCATTCTTGTGTACTATAAGTTGCCTTTGAGGC
                                        tatatatgatttca  TA-rich tract