1 5' 3' | 2 5' 3' | 3 5' 3' |
...acaataccaaaagcactcaaggaactgtgtctaagttttgtcctttcttgtttttggttatgtcggttattgtgtatgtgtttaatttctggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGA
species | Glycine max |
transcript | GLYMA16G32290.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTCAACATTAGTTCACAAGCTACATTTG GGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCEST: gi|7925570|gb|AW831596.1|AW831596
genomic: AAGTCAACATTAGTTCACAAGCTACATTTGgtaacacttc ... ggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATC
EST: GTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTG GGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCEST: gi|7588829|gb|AW704616.1|AW704616
genomic: GTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTGgtaacacttc ... ggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATC
EST: GTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTG GGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATC
genomic: GTATGGTTCAATTTACCATGAAGTCAACATTAGTTCACAAGCTACATTTGgtaacacttc ... ggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATC
tcttgtttttggttatgtcggttattgtgtatgtgtttaatttctggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGA
gtttaat putative branch site (score: 4)
tatgtgtttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaataccaaaagcactcaaggaactgtgtctaagttttgtcctttcttgtttttggttatgtcggttattgtgtatgtgtttaatttctggggttgcagGGGAGTTGAAGAAAATGCTGTCTGGGCCAACTGGGTTACACCATGAAGATCAAAAGCTGTTATACAAAGACAAGGAGAGGGATTCAAAGGCTTTTCTTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG